function PAR=PARabalone3b(Nspecies,Nvar) % % define model parameters and values % some parameters are independent of space, others are arrays PAR.case='3b'; PAR.Nvar=Nvar; PAR.Nspecies=Nspecies; PAR.iS=1;PAR.iI=2;PAR.iD=3;PAR.iP=4; PAR.depth = 1; % vertical dimension of the volume (m) % infection rate by contact with infections particles % [infected produced/infectious particle/day] % the convention is IPinfect(source species, infected species) PAR.IPinfect = zeros(Nspecies,Nspecies); % particles from species 1 infect species 2 PAR.IPinfect(1,2) = 0.005; PAR.IPinfect(2,1) = 0.0002; %PAR.IPinfect(1,1) = 0.025; %PAR.IPinfect(2,2) = 0.025; %PAR.IPinfect = 0.025*ones(Nspecies,Nspecies); % infection rate by contact with infectious individuals % [infected produced/susceptible animal/day] PAR.Iinfect = zeros(Nspecies,Nspecies); %PAR.Iinfect = 0.02*ones(Nspecies,Nspecies); % infection rate by contact with dead infected individuals % [infected produced/susceptible animal/day] PAR.Dinfect = zeros(Nspecies,Nspecies); %PAR.Dinfect = 0.0008*ones(Nspecies,Nspecies); % reproduction rate for susceptibles PAR.Srepro = zeros(Nspecies,1); % PAR.Srepro(1) = .09; PAR.Srepro(2) = .05; % reproduction rate for infected PAR.Irepro = zeros(Nspecies,1); PAR.Irepro(1) = .005; PAR.Irepro(2) = .005; % carrying capacity for the population PAR.Carry = zeros(Nspecies,1); PAR.Carry(1)=150; PAR.Carry(2)=150; % mortality rate of infected [1/day] PAR.Imort = 0.04*ones(Nspecies,1); % background mortality rate of infected [1/day] %PAR.Bmort = .08*ones(Nspecies,1); PAR.Bmort = zeros(Nspecies,1); % removal rate of dead [1/day] PAR.DeadDecay = 0.5*ones(Nspecies,1); % infectious particles released by infected [particles/animal/day] %PAR.Irelease = .015*ones(Nspecies,1); PAR.Irelease = zeros(Nspecies,1); PAR.Irelease(1)=.001; PAR.Irelease(2)=.0001; % infectious particles released by dead [particles/animal/day] PAR.Drelease = ones(Nspecies,1); % removal rate of IP from the environment [1/day] %PAR.IPremove = 0.001*ones(Nspecies,1); PAR.IPremove = zeros(Nspecies,1); PAR.IPremove(1) = 0.1; PAR.IPremove(2) = 0.01;