function PAR=PARabalone4(Nvar,Nspecies,Nx,Ny) % % define model parameters and values % some parameters are independent of space, others are arrays PAR.case='4'; PAR.Nvar=Nvar; PAR.Nspecies=Nspecies; PAR.Nx=Nx; PAR.Ny=Ny; PAR.iS=1;PAR.iI=2;PAR.iD=3;PAR.iP=4; PAR.depth = ones(Ny,Nx); % vertical dimension of the volume (m) % infection rate by contact with infections particles % [infected produced/infectious particle/day] % the convention is IPinfect(source species, infected species) PAR.IPinfect = zeros(Nspecies,Nspecies); % particles from species 1 infect species 2 PAR.IPinfect(1,2) = 0.025; PAR.IPinfect(2,1) = 0.001; %PAR.IPinfect(1,1) = .003; %PAR.IPinfect(2,2) = 0.025; %PAR.IPinfect = 0.025*ones(Nspecies,Nspecies); % infection rate by contact with infectious individuals % [infected produced/susceptible animal/day] PAR.Iinfect = zeros(Nspecies,Nspecies); %PAR.Iinfect = 0.02*ones(Nspecies,Nspecies); % infection rate by contact with dead infected individuals % [infected produced/susceptible animal/day] PAR.Dinfect = zeros(Nspecies,Nspecies); %PAR.Dinfect = 0.0008*ones(Nspecies,Nspecies); % reproduction rate for susceptibles PAR.Srepro = zeros(Nspecies,1); % PAR.Srepro(1,:,:) = .01; PAR.Srepro(2,:,:) = .01; % reproduction rate for infected PAR.Irepro = zeros(Nspecies,1); %PAR.Irepro(1) = .05; %PAR.Irepro(2) = .05; % carrying capacity for the population PAR.Carry = zeros(Nspecies,1); PAR.Carry(1)=150; PAR.Carry(2)=100; % mortality rate of infected [1/day] PAR.Imort = 0.08*ones(Nspecies,1); % background mortality rate of infected [1/day] %PAR.Bmort = 0.08*ones(Nspecies,1); PAR.Bmort = zeros(Nspecies,1); % removal rate of dead [1/day] PAR.DeadDecay = 1.5*ones(Nspecies,1); % infectious particles released by infected [particles/animal/day] %PAR.Irelease = .015*ones(Nspecies,1); PAR.Irelease = zeros(Nspecies,1); PAR.Irelease(1)=.1; PAR.Irelease(2)=.01; % infectious particles released by dead [particles/animal/day] PAR.Drelease = ones(Nspecies,1); % removal rate of IP from the environment [1/day] %PAR.IPremove = 0.001*ones(Nspecies,1); PAR.IPremove = zeros(Nspecies,1); PAR.IPremove(1) = 0.001; PAR.IPremove(2) = 0.001; % rate of transfer of IP in the E/W direction [1/day] %PAR.Uex = zeros(Ny,Nx-1); %PAR.Uex = 0.05*ones(Ny,Nx-1); %PAR.Uex = [0.02 0.02 ;0 0; -0.02 -0.02 ]; PAR.Uex = [0.02 0.02 ;0 0;0 0; -0.02 -0.02 ]; % rate of transfer of IP in the N/S direction [1/day] %PAR.Vex = zeros(Ny-1,Nx); %PAR.Vex = 0.2*ones(Ny-1,Nx); %PAR.Vex = [-0.02 0 0.02; -0.02 0 0.02]; PAR.Vex = [-0.02 0 0.02; -0.02 0 0.02; -0.02 0 0.02];